Genes associated with “status epilepticus

347 genes foundHPO: Status epilepticusOpen Targets: status epilepticus1 PanelApp panel
How are genes scored? (0–100 composite)
-5–15
ClinGen
0–15
HPO Freq
0–15
Open Targets
0–12
Phen2Gene
0–10
ClinVar
0–8
Constraint
0–8
Dosage
0–8
OMIM CS
0–8
PanelApp
0–5
OMIM
0–5
G2P
0–4
Breadth
Tiers:Strong Candidates (≥20)Consider (≥8)Possible (≥3)
Evidence dots:
HPOClinVarPhen2GeneOpen TargetsPanelApp
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Strong Candidates

6 genes
1
SCN2A

sodium voltage-gated channel alpha subunit 2

36
score
ClinGen: DefinitiveP2G #5GTR ↑

episodic ataxia, type 9

Frequency
100%
n=1
P/LP Variants
2
OT Score
0.36
2
SCN1A

sodium voltage-gated channel alpha subunit 1

36
score
ClinGen: DefinitiveP2G #4GTR ↑

developmental and epileptic encephalopathy 6B

Frequency
44%
n=9
P/LP Variants
1
OT Score
0.36
3
GABRA1

gamma-aminobutyric acid type A receptor subunit alpha1

29
score
ClinGen: DefinitiveP2G #30GTR ↑

developmental and epileptic encephalopathy, 19

Frequency
75%
n=4
P/LP Variants
2
OT Score
0.55
28
score
ClinGen: DefinitiveP2G #1GTR ↑

pyridoxine-dependent epilepsy caused by ALDH7A1 mutant

Frequency
25%
n=8
P/LP Variants
125
OT Score
-
5
GRIN2B

glutamate ionotropic receptor NMDA type subunit 2B

24
score
ClinGen: DefinitiveGTR ↑

intellectual disability, autosomal dominant 6

Frequency
100%
n=1
P/LP Variants
1
OT Score
0.31
6
ALDH5A1

aldehyde dehydrogenase 5 family member A1

22
score
ClinGen: DefinitiveP2G #3GTR ↑

succinic semialdehyde dehydrogenase deficiency

Frequency
-
P/LP Variants
-
OT Score
0.34

Consider

48 genes
20GRIN2D
Def

glutamate ionotropic receptor NMDA type subunit 2D

19SATB2
Def
19GABRG2
Def#7

gamma-aminobutyric acid type A receptor subunit gamma2

18GABRB3
Def

gamma-aminobutyric acid type A receptor subunit beta3

17CSNK2B
Def
16PNPO
Def
16SLC19A3
Def
16EPM2A
Def
16NHLRC1
Def

developmental and epileptic encephalopathy, 78

serine/arginine repetitive matrix 2

developmental and epileptic encephalopathy, 79

14SCN9A
Ref#6

sodium voltage-gated channel alpha subunit 9

gamma-aminobutyric acid type A receptor subunit alpha3

13FARS2
Def
13MLC1
Def
12WARS2
Def
12CHD2
Def

developmental and epileptic encephalopathy 94

12PCDH19
Def#12

developmental and epileptic encephalopathy, 9

12CNKSR2
Def
12SCN3A
Def#14

sodium voltage-gated channel alpha subunit 3

12SCN8A
Def#15

sodium voltage-gated channel alpha subunit 8

12GABRB2
Def

gamma-aminobutyric acid type A receptor subunit beta2

11KCNT1
Def

developmental and epileptic encephalopathy, 14

10GABRD
Mod

gamma-aminobutyric acid type A receptor subunit delta

10SCN5A
DefSF

sodium voltage-gated channel alpha subunit 5

10SCN11A
Def

sodium voltage-gated channel alpha subunit 11

10SCN4A
Def

sodium voltage-gated channel alpha subunit 4

10CACNA1B
Mod

calcium voltage-gated channel subunit alpha1 B

10NUS1
Def

congenital disorder of glycosylation, type IAA

10SLC2A1
Def

hereditary cryohydrocytosis with reduced stomatin

9ST3GAL5
Def#10

GM3 synthase deficiency

9ATP1A3
Def

developmental and epileptic encephalopathy 99

9BMPR2
Def
9CASK
Def
9MECP2
Def

syndromic X-linked intellectual disability Lubs type

8HCN1
Def

developmental and epileptic encephalopathy, 24

8POLG
Lim#11

mitochondrial DNA depletion syndrome 4a

developmental and epileptic encephalopathy, 42

gamma-aminobutyric acid type A receptor subunit gamma1

gamma-aminobutyric acid type A receptor subunit gamma3

8UPB1
#9

beta-ureidopropionase deficiency

8GALC
Def

galactosylceramidase

Possible

255 genes — click to expand
8STXBP1
Def

developmental and epileptic encephalopathy, 4

8TWNK
Def

mitochondrial DNA depletion syndrome 7 (hepatocerebral type)

8SLC1A2
Def

developmental and epileptic encephalopathy, 41

developmental and epileptic encephalopathy, 64

8GRIN2A
Def

glutamate ionotropic receptor NMDA type subunit 2A

8GRIN1
Def

glutamate ionotropic receptor NMDA type subunit 1

7CAD
Def

developmental and epileptic encephalopathy, 50

7DNM1
Def

developmental and epileptic encephalopathy, 31A

7WWOX
Def

developmental and epileptic encephalopathy, 28

sodium voltage-gated channel alpha subunit 7

7SCN10A
Dis

sodium voltage-gated channel alpha subunit 10

7FGF12
Def

developmental and epileptic encephalopathy, 47

7FIG4
Def

bilateral parasagittal parieto-occipital polymicrogyria

7ALS2
Def
7ASS1
Def
7COL3A1
DefSF
7COL5A2
Def
7CPS1
Def
7CTLA4
Def
7F13A1
Def
7GLS
Def
7HECW2
Def
7HIBCH
Def
7ICOS
Def
7MARS2
Def
7MT-TW
Def
7NDUFB3
Def
7NDUFS1
Def
7STAT1
Def
7TRRAP
Def
7UNC80
Def
7ATP1A1
Mod

hypomagnesemia, seizures, and intellectual disability 2

7GABRB1
Lim

gamma-aminobutyric acid type A receptor subunit beta1

developmental and epileptic encephalopathy, 69

7PDSS2
Mod

coenzyme Q10 deficiency, primary, 3

7SYNJ1
Def

developmental and epileptic encephalopathy, 53

6CTSD
Def#13

neuronal ceroid lipofuscinosis 10

6PIGS
Def

glycosylphosphatidylinositol biosynthesis defect 18

6QARS1
Def

diffuse cerebral and cerebellar atrophy - intractable seizures - progressive microcephaly syndrome

6CARS2
Mod

combined oxidative phosphorylation defect type 27

developmental and epileptic encephalopathy, 25

6AMACR
Def#17

alpha-methylacyl-CoA racemase deficiency

6TP53
DefSF

tumor protein p53

microcephalic osteodysplastic primordial dwarfism type I

6CD28
Mod
6NDUFA9
Mod
6OTUD5
Mod
6SPTBN1
Str
6PIGA
Def

multiple congenital anomalies-hypotonia-seizures syndrome 2

6PRODH
Def

hyperprolinemia type 1

6ITPA
Def

developmental and epileptic encephalopathy, 35

6GNB1
Def

intellectual disability, autosomal dominant 42

gamma-aminobutyric acid type A receptor subunit alpha4

gamma-aminobutyric acid type A receptor subunit alpha6

gamma-aminobutyric acid type A receptor subunit epsilon

gamma-aminobutyric acid type A receptor subunit pi

gamma-aminobutyric acid type A receptor subunit theta

6NARS2
Def

combined oxidative phosphorylation defect type 24

6PPP3CA
Str

developmental and epileptic encephalopathy 91

6GRIA4
Mod

neurodevelopmental disorder with or without seizures and gait abnormalities

developmental and epileptic encephalopathy, 16

6DNM1L
Def

encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1

6NEXMIF
Def

X-linked intellectual disability, Cantagrel type

PEHO-like syndrome

5SON
Def

ZTTK syndrome

synaptic vesicle glycoprotein 2A

encephalopathy, progressive, early-onset, with episodic rhabdomyolysis

ALPHA-METHYLACYL-CoA RACEMASE DEFICIENCY; AMACRD

AMYLOIDOSIS, HEREDITARY SYSTEMIC 1; AMYLD1

5CASP10
Lim

DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 11; DEE11

DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85

DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 9; DEE9

5DNAH7
Lim

ENCEPHALOPATHY DUE TO DEFECTIVE MITOCHONDRIAL AND PEROXISOMAL FISSION 1; EMPF1

EPILEPSY, EARLY-ONSET, 4, VITAMIN B6-DEPENDENT; EPEO4

5ERBB4
Lim

HYPERPROLINEMIA, TYPE I; HYRPRO1

MITOCHONDRIAL DNA DEPLETION SYNDROME 4A (ALPERS TYPE); MTDPS4A

MITOCHONDRIAL DNA DEPLETION SYNDROME 7 (HEPATOCEREBRAL TYPE); MTDPS7

5MYL1
Lim

NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HEMOCHROMATOSIS; NEDEPH

SUCCINIC SEMIALDEHYDE DEHYDROGENASE DEFICIENCY; SSADHD

INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED 98; XLID98

developmental and epileptic encephalopathy, 48

5AGO1
Def

neurodevelopmental disorder with language delay and behavioral abnormalities, with or without seizures

5BCL10
Def

immunodeficiency 37

cortical dysplasia-focal epilepsy syndrome

5COQ2
Def

coenzyme Q10 deficiency, primary, 1

5COX10
Def

mitochondrial complex IV deficiency, nuclear type 3

5FDXR
Def

multiple mitochondrial dysfunctions syndrome 9b

5HNRNPU
Def

developmental and epileptic encephalopathy, 54

5KCNC2
Def

developmental and epileptic encephalopathy 103

5MICU1
Def

proximal myopathy with extrapyramidal signs

5NFU1
Def

spastic paraplegia 93, autosomal recessive

5PSAP
Def

Gaucher disease due to saposin C deficiency

COG8-congenital disorder of glycosylation

glutamate ionotropic receptor NMDA type subunit 2C

glutamate ionotropic receptor NMDA type subunit 3A

glutamate ionotropic receptor NMDA type subunit 3B

mitochondrial DNA depletion syndrome 8a

developmental and epileptic encephalopathy, 38

4ATP1A2
Def

developmental and epileptic encephalopathy 98

developmental and epileptic encephalopathy, 58

Hirschsprung disease, cardiac defects, and autonomic dysfunction

4DEPDC5
Def

developmental and epileptic encephalopathy 111

4BRAT1
Def

neonatal-onset encephalopathy with rigidity and seizures

4VARS1
Def

neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy

4CA2
Def

carbonic anhydrase 2

4KDR
Def

kinase insert domain receptor

4KCNH5
Def

developmental and epileptic encephalopathy 112

4PET100
Def

mitochondrial complex IV deficiency, nuclear type 12

4SATB1
Def

Kohlschutter-Tonz syndrome-like

4ACADL
Dis
4PMS1
Ref
4KCTD7
Def

progressive myoclonic epilepsy type 3

4PACS2
Def

developmental and epileptic encephalopathy, 66

4PEX5
Def

rhizomelic chondrodysplasia punctata type 5

4TBK1
Def

autoinflammation with arthritis and vasculitis

developmental and epileptic encephalopathy, 34

progressive myoclonic epilepsy type 9

4ATP5PO
Str

mitochondrial complex V (ATP synthase) deficiency, nuclear type 7

4NDUFA6
Mod

mitochondrial complex I deficiency, nuclear type 33

4GOSR2
Def

progressive myoclonic epilepsy type 6

developmental and epileptic encephalopathy, 56

4KCNMA1
Def

Liang-Wang syndrome

intellectual disability-epilepsy-extrapyramidal syndrome

3CLN6
Def

ceroid lipofuscinosis, neuronal, 6B (Kufs type)

3CRELD1
Lim

Jeffries-Lakhani neurodevelopmental syndrome

3NDUFA8
Mod

mitochondrial complex I deficiency, nuclear type 37

developmental and epileptic encephalopathy, 39

3TBCK
Def

hypotonia, infantile, with psychomotor retardation and characteristic facies 3

Data aggregated from HPO/Monarch, ClinVar, OMIM (phenotypes + clinical synopsis), Open Targets, PanelApp, Phen2Gene, and Gene2Phenotype. Click a gene to view full details.