GABRG2

Chr 5AD

gamma-aminobutyric acid type A receptor subunit gamma2

Also known as: CAE2, DEE74, ECA2, EIEE74, FEB8, GEFSP3

This gene encodes a gamma-aminobutyric acid (GABA) receptor. GABA is the major inhibitory neurotransmitter in the mammlian brain, where it acts at GABA-A receptors, which are ligand-gated chloride channels. GABA-A receptors are pentameric, consisting of proteins from several subunit classes: alpha, beta, gamma, delta and rho. Mutations in this gene have been associated with epilepsy and febrile seizures. Multiple transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Developmental and epileptic encephalopathy 74MIM #618396
AD
Febrile seizures, familial, 8MIM #607681
AD
Generalized epilepsy with febrile seizures plus, type 3MIM #607681
AD
UniProtEpilepsy, childhood absence 2

Clinical highlights

Gene-disease validity (ClinGen)
epilepsy · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Both loss of function and dominant negative mechanisms are described for this gene and which one applies is variant-dependent. Do not assume a null variant is — or isn't — the pathogenic class without checking the specific variant against curated evidence.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
61
Pubs (1 yr)
P/LP submissions
P/LP missense
0.40
LOEUF
LOF/DN*
Mechanism· annotated
📖
GeneReview available — GABRG2
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.40LOEUF
pLI 0.739
Z-score 3.86
OE 0.19 (0.100.40)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.99Z-score
OE missense 0.49 (0.430.57)
137 obs / 277.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.19 (0.100.40)
00.351.4
Missense OE?0.49 (0.430.57)
00.61.4
Synonymous OE?1.10
01.21.6
LoF obs/exp: 5 / 26.4Missense obs/exp: 137 / 277.3Syn Z: -0.79

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GABRG2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.