KANSL1L

Chr 2

KAT8 regulatory NSL complex subunit 1 like

Also known as: C2orf67, MSL1v2

The protein is predicted to bind histone acetyltransferases and participate in the NSL complex, which regulates gene expression through chromatin modification. This gene is highly constrained against loss-of-function variants (LOEUF 0.352), suggesting that mutations would likely cause significant developmental effects, though specific disease associations have not yet been established in humans.

OMIMResearchSummary from RefSeq
LOFmechanismLOEUF 0.35
Clinical SummaryKANSL1L
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.66) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.35LOEUF
pLI 0.657
Z-score 5.25
OE 0.21 (0.130.35)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
0.25Z-score
OE missense 0.97 (0.901.04)
470 obs / 485.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.21 (0.130.35)
00.351.4
Missense OE0.97 (0.901.04)
00.61.4
Synonymous OE1.11
01.21.6
LoF obs/exp: 11 / 51.8Missense obs/exp: 470 / 485.2Syn Z: -1.15
DN
0.4784th %ile
GOF
0.3094th %ile
LOF
0.74top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.35

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

KANSL1L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found