CSNK2B

Chr 6AD

casein kinase 2 beta

Also known as: CK II beta, CK2B, CK2N, CSK2B, Ckb1, Ckb2, G5A, POBINDS

This gene encodes the beta subunit of casein kinase II, a ubiquitous protein kinase which regulates metabolic pathways, signal transduction, transcription, translation, and replication. The enzyme is composed of three subunits, alpha, alpha prime and beta, which form a tetrameric holoenzyme. The alpha and alpha prime subunits are catalytic, while the beta subunit serves regulatory functions. The enzyme localizes to the endoplasmic reticulum and the Golgi apparatus. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Poirier-Bienvenu neurodevelopmental syndromeMIM #618732
AD

Clinical highlights

Gene-disease validity (ClinGen)
Poirier-Bienvenu neurodevelopmental syndrome · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
20
Pubs (1 yr)
P/LP submissions
P/LP missense
0.38
LOEUF
LOF
Mechanism· G2P
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GeneReview available — CSNK2B
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.38LOEUF
pLI 0.917
Z-score 3.00
OE 0.08 (0.030.38)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
3.13Z-score
OE missense 0.21 (0.160.30)
27 obs / 125.8 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.08 (0.030.38)
00.351.4
Missense OE?0.21 (0.160.30)
00.61.4
Synonymous OE?0.83
01.21.6
LoF obs/exp: 1 / 12.4Missense obs/exp: 27 / 125.8Syn Z: 0.91

ClinVar

No ClinVar data available.

Protein Context — Lollipop Plot

CSNK2B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.