TBCK

Chr 4AR

TBC1 domain containing kinase

Also known as: FERRY1, Fy-1, HSPC302, IHPRF3, TBCKL

This gene encodes a protein that contains a protein kinase domain, a Rhodanase-like domain and the Tre-2/Bub2/Cdc16 (TBC) domain. The encoded protein is thought to play a role in actin organization, cell growth and cell proliferation by regulating the mammalian target of the rapamycin (mTOR) signaling pathway. This protein may also be involved in the transcriptional regulation of the components of the mTOR complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Hypotonia, infantile, with psychomotor retardation and characteristic facies 3MIM #616900
AR

Clinical highlights

Gene-disease validity (ClinGen)
syndromic complex neurodevelopmental disorder · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
7
Pubs (1 yr)
P/LP submissions
P/LP missense
0.87
LOEUF
LOF
Mechanism· G2P
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GeneReview available — TBCK
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.87LOEUF
pLI 0.000
Z-score 2.28
OE 0.65 (0.480.87)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.50Z-score
OE missense 0.93 (0.861.01)
418 obs / 448.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.65 (0.480.87)
00.351.4
Missense OE?0.93 (0.861.01)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 31 / 48.0Missense obs/exp: 418 / 448.0Syn Z: 0.07

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TBCK · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.