CTSD

Chr 11AR

cathepsin D

Also known as: CLN10, CPSD, HEL-S-130P

This gene encodes a member of the A1 family of peptidases. The encoded preproprotein is proteolytically processed to generate multiple protein products. These products include the cathepsin D light and heavy chains, which heterodimerize to form the mature enzyme. This enzyme exhibits pepsin-like activity and plays a role in protein turnover and in the proteolytic activation of hormones and growth factors. Mutations in this gene play a causal role in neuronal ceroid lipofuscinosis-10 and may be involved in the pathogenesis of several other diseases, including breast cancer and possibly Alzheimer's disease. [provided by RefSeq, Nov 2015]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Ceroid lipofuscinosis, neuronal, 10MIM #610127
AR

Clinical highlights

Gene-disease validity (ClinGen)
neuronal ceroid lipofuscinosis · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
2
Active trials
184
Pubs (1 yr)
P/LP submissions
P/LP missense
0.80
LOEUF
LOF
Mechanism· G2P
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.80LOEUF
pLI 0.001
Z-score 2.21
OE 0.44 (0.260.80)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.38Z-score
OE missense 0.76 (0.670.85)
190 obs / 251.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.44 (0.260.80)
00.351.4
Missense OE?0.76 (0.670.85)
00.61.4
Synonymous OE?1.11
01.21.6
LoF obs/exp: 8 / 18.2Missense obs/exp: 190 / 251.6Syn Z: -0.91

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CTSD · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.