CTSD
Chr 11ARcathepsin D
Also known as: CLN10, CPSD, HEL-S-130P
The protein is a lysosomal enzyme that breaks down proteins and activates hormones and growth factors through pepsin-like proteolytic activity. Mutations cause neuronal ceroid lipofuscinosis-10, an autosomal recessive lysosomal storage disorder. The pathogenic mechanism involves dominant-negative effects where mutant protein disrupts normal lysosomal function.
Definitive — sufficient evidence for diagnostic panels
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Typical tolerance to LoF variation
Mild missense constraint
Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.
The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.
ClinVar Variant Classifications
500 submitted variants in ClinVar
Classification Summary
Curated Variants Distribution
Classified variants from ClinVar · 5 ACMG categories
| Classification | LoF | Missense + Inframe | Non-coding | Synonymous | Total |
|---|---|---|---|---|---|
Pathogenic | 25 | 0 | 13 | 0 | 38 |
Likely Pathogenic | 11 | 0 | 1 | 0 | 12 |
VUS | 4 | 154 | 20 | 2 | 180 |
Likely Benign | 1 | 2 | 116 | 127 | 246 |
Benign | 0 | 0 | 13 | 0 | 13 |
Conflicting | — | 10 | |||
| Total | 41 | 156 | 163 | 129 | 499 |
LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly
View in ClinVar →Protein Context — Lollipop Plot
CTSD · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
External Resources
Links to major genomics databases and tools