SLC12A5
Chr 20ADARsolute carrier family 12 member 5
Also known as: DEE34, EIEE34, EIG14, KCC2, hKCC2
The encoded protein is a neuronal potassium-chloride cotransporter that maintains low intracellular chloride levels required for proper GABA-mediated inhibition and is involved in dendritic spine formation and maturation. Mutations cause developmental and epileptic encephalopathy 34 and idiopathic generalized epilepsy through both autosomal dominant and autosomal recessive inheritance patterns. The gene is highly intolerant to loss-of-function variants, and disease predominantly results from haploinsufficiency, though the dual inheritance patterns suggest variant-dependent mechanisms of pathogenicity.
Limited evidence — not for standalone diagnostic reporting
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Among the most LoF-intolerant genes (~top 3%)
Highly missense-constrained (top ~0.1%)
KCC2 potassium-chloride cotransporter. LOF variants reduce chloride extrusion capacity, impairing GABAergic inhibition and causing DEE. GOF is not an established mechanism.
Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.
The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
SLC12A5 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools