PRICKLE2

Chr 3

prickle planar cell polarity protein 2

Also known as: EPM5

This gene encodes a homolog of Drosophila prickle. The exact function of this gene is not known, however, studies in mice suggest that it may be involved in seizure prevention. Mutations in this gene are associated with progressive myoclonic epilepsy type 5. [provided by RefSeq, Dec 2011]

ResearchGenerating clinical summary…

Clinical highlights

Gene-disease validity (ClinGen)
complex neurodevelopmental disorder · ADLimitednot for standalone diagnostic reporting
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
14
Pubs (1 yr)
P/LP submissions
P/LP missense
0.28
LOEUF· LoF intol.
LOF
Mechanism· predicted
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.28LOEUF
pLI 0.995
Z-score 4.96
OE 0.13 (0.070.28)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.72Z-score
OE missense 0.78 (0.720.85)
396 obs / 504.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.13 (0.070.28)
00.351.4
Missense OE?0.78 (0.720.85)
00.61.4
Synonymous OE?1.03
01.21.6
LoF obs/exp: 5 / 38.0Missense obs/exp: 396 / 504.9Syn Z: -0.38

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRICKLE2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →