CACNA1B

Chr 9AR

calcium voltage-gated channel subunit alpha1 B

Also known as: BIII, CACNL1A5, CACNN, Cav2.2, DYT23, NEDNEH

The protein encoded by this gene is the pore-forming subunit of an N-type voltage-dependent calcium channel, which controls neurotransmitter release from neurons. The encoded protein forms a complex with alpha-2, beta, and delta subunits to form the high-voltage activated channel. This channel is sensitive to omega-conotoxin-GVIA and omega-agatoxin-IIIA but insensitive to dihydropyridines. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Neurodevelopmental disorder with seizures and nonepileptic hyperkinetic movementsMIM #618497
AR

Clinical highlights

Gene-disease validity (ClinGen)
complex neurodevelopmental disorder with motor features · ARModerateconsider for supplementary testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
19
Pubs (1 yr)
P/LP submissions
P/LP missense
0.24
LOEUF· LoF intol.
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.24LOEUF
pLI 1.000
Z-score 7.85
OE 0.16 (0.110.24)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
4.52Z-score
OE missense 0.65 (0.610.69)
841 obs / 1299.1 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.16 (0.110.24)
00.351.4
Missense OE?0.65 (0.610.69)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 16 / 101.2Missense obs/exp: 841 / 1299.1Syn Z: -0.42

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CACNA1B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →