MLC1

Chr 22AR

modulator of VRAC current 1

Also known as: LVM, MLC, VL

The function of this gene product is unknown; however, homology to other proteins suggests that it may be an integral membrane transporter. Mutations in this gene have been associated with megalencephalic leukoencephalopathy with subcortical cysts, an autosomal recessive neurological disorder. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Megalencephalic leukoencephalopathy with subcortical cysts 1MIM #604004
AR
Megalencephalic leukoencephalopathy with subcortical cysts 1MIM #604004
AR

Clinical highlights

Gene-disease validity (ClinGen)
megalencephalic leukoencephalopathy with subcortical cysts 1 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
26
Pubs (1 yr)
P/LP submissions
P/LP missense
1.16
LOEUF
LOF
Mechanism· G2P
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GeneReview available — MLC1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.16LOEUF
pLI 0.000
Z-score 1.03
OE 0.74 (0.491.16)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.20Z-score
OE missense 0.96 (0.861.08)
210 obs / 218.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.74 (0.491.16)
00.351.4
Missense OE?0.96 (0.861.08)
00.61.4
Synonymous OE?0.95
01.21.6
LoF obs/exp: 14 / 18.8Missense obs/exp: 210 / 218.4Syn Z: 0.41

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MLC1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.