P4HTM

Chr 3

prolyl 4-hydroxylase, transmembrane

Also known as: EGLN4, HIDEA, HIFPH4, P4H-TM, PH-4, PH4, PHD4

The product of this gene belongs to the family of prolyl 4-hydroxylases. This protein is a prolyl hydroxylase that may be involved in the degradation of hypoxia-inducible transcription factors under normoxia. It plays a role in adaptation to hypoxia and may be related to cellular oxygen sensing. Alternatively spliced variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtHypotonia, hyperventilation, impaired intellectual development, dysautonomia, epilepsy, and eye abnormalities

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
1.00
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.00LOEUF
pLI 0.000
Z-score 1.54
OE 0.67 (0.461.00)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
1.54Z-score
OE missense 0.76 (0.690.84)
253 obs / 332.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.67 (0.461.00)
00.351.4
Missense OE?0.76 (0.690.84)
00.61.4
Synonymous OE?0.97
01.21.6
LoF obs/exp: 17 / 25.4Missense obs/exp: 253 / 332.1Syn Z: 0.23

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

P4HTM · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.