TAFA4

Chr 3

TAFA chemokine like family member 4

Also known as: FAM19A4, TAFA-4

This gene is a member of the TAFA family which is composed of five highly homologous genes that encode small secreted proteins. These proteins contain conserved cysteine residues at fixed positions, and are distantly related to MIP-1alpha, a member of the CC-chemokine family. The TAFA proteins are predominantly expressed in specific regions of the brain, and are postulated to function as brain-specific chemokines or neurokines, that act as regulators of immune and nervous cells. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Nov 2011]

OMIMResearchGenerating clinical summary…
2
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
1.29
LOEUF
DN
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.29LOEUF
pLI 0.001
Z-score 0.97
OE 0.65 (0.361.29)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.11Z-score
OE missense 1.03 (0.871.23)
91 obs / 88.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.65 (0.361.29)
00.351.4
Missense OE?1.03 (0.871.23)
00.61.4
Synonymous OE?1.21
01.21.6
LoF obs/exp: 6 / 9.2Missense obs/exp: 91 / 88.1Syn Z: -0.97

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TAFA4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.