PSAP
Chr 10ADARprosaposin
The protein is proteolytically processed to generate four saposins (A-D) that localize to lysosomes and facilitate the catabolism of glycosphingolipids with short oligosaccharide groups. Mutations cause autosomal recessive lysosomal storage disorders including combined saposin deficiency, metachromatic leukodystrophy due to saposin B deficiency, and atypical forms of Gaucher and Krabbe diseases, as well as autosomal dominant susceptibility to Parkinson disease. The pathogenic mechanism involves impaired glycosphingolipid degradation due to deficient saposin cofactor function.
Definitive — sufficient evidence for diagnostic panels
4 total gene-disease associations curated
Some data sources returned errors (1)
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Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Highly LoF-intolerant (top ~10% of genes)
Tolerant to missense variation
Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.
The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
PSAP · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
Host Response to Infection by Direct Analysis of Leukocyte Single Cell-type Gene Expression/transcript Abundance, Direct LS-TA
ACTIVE NOT RECRUITINGHost Response to Infection by Direct Analysis of Leukocyte Single Cell-type Gene Expression/transcript Abundance, Direct LS-TA. a Prospective Study Will Evaluate the Performance of Direct LS-TA in Triage Febrile Patients Into Major Categories of Infections: Viral, Bacterial or Active Tuberculosis.
NOT YET RECRUITINGDetermine the Frequency of Variants in the GBA/PSAP Genes in Patients With MM or MGUS
NOT YET RECRUITINGExternal Resources
Links to major genomics databases and tools