ZNF598

Chr 16

zinc finger protein 598, E3 ubiquitin ligase

Also known as: HEL2

ZNF598 encodes an E3 ubiquitin ligase that functions as a ribosome collision sensor, detecting stalled ribosomes during translation and triggering ribosome quality control pathways that lead to degradation of aberrant nascent peptides. Mutations cause autosomal recessive neurodevelopmental disorder with or without anomalies of the brain, eye, or heart, typically presenting in early childhood with developmental delay, intellectual disability, and variable congenital malformations. The gene shows high constraint against loss-of-function variants (LOEUF 0.399), indicating that complete loss of protein function is likely not tolerated.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 0.40
Clinical SummaryZNF598
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.55) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.40LOEUF
pLI 0.548
Z-score 4.19
OE 0.21 (0.120.40)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
-0.92Z-score
OE missense 1.11 (1.041.19)
590 obs / 530.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.21 (0.120.40)
00.351.4
Missense OE1.11 (1.041.19)
00.61.4
Synonymous OE1.37
01.21.6
LoF obs/exp: 7 / 32.9Missense obs/exp: 590 / 530.1Syn Z: -4.48

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ZNF598 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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