ZNF407

Chr 18AR

zinc finger protein 407

Also known as: SIMHA

This gene encodes a zinc finger protein whose exact function is not known. It may be involved in transcriptional regulation. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

SIMHA syndromeMIM #619557
AR
UniProtShort stature, impaired intellectual development, microcephaly, hypotonia, and ocular anomalies

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
2
Pubs (1 yr)
P/LP submissions
P/LP missense
0.09
LOEUF· LoF intol.
LOF
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.09LOEUF
pLI 1.000
Z-score 7.44
OE 0.03 (0.010.09)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
0.86Z-score
OE missense 0.93 (0.890.98)
1173 obs / 1258.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.03 (0.010.09)
00.351.4
Missense OE?0.93 (0.890.98)
00.61.4
Synonymous OE?1.13
01.21.6
LoF obs/exp: 2 / 68.4Missense obs/exp: 1173 / 1258.8Syn Z: -2.20

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ZNF407 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →