ZNF385D

Chr 3

zinc finger protein 385D

Also known as: ZNF659

The ZNF385D protein enables sequence-specific double-stranded DNA binding and is predicted to be active in the nucleus. This gene is highly constrained against loss-of-function variants (LOEUF 0.47), suggesting mutations would likely cause severe disease, but no specific clinical phenotypes or inheritance patterns have been established yet for ZNF385D-related disorders.

OMIMResearchSummary from RefSeq
LOFmechanismLOEUF 0.47
Clinical SummaryZNF385D
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.65) — some intolerance to loss-of-function variants.
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ClinVar Variants
22 unique Pathogenic / Likely Pathogenic· 74 VUS of 112 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.47LOEUF
pLI 0.654
Z-score 3.08
OE 0.18 (0.080.47)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
0.63Z-score
OE missense 0.88 (0.790.99)
203 obs / 229.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.18 (0.080.47)
00.351.4
Missense OE0.88 (0.790.99)
00.61.4
Synonymous OE1.19
01.21.6
LoF obs/exp: 3 / 16.5Missense obs/exp: 203 / 229.8Syn Z: -1.40
DN
0.5280th %ile
GOF
0.3887th %ile
LOF
0.74top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.47

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

112 submitted variants in ClinVar

Classification Summary

Pathogenic22
VUS74
Benign3
22
Pathogenic
74
VUS
3
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
22
0
22
Likely Pathogenic
0
0
0
0
0
VUS
0
68
6
0
74
Likely Benign
0
0
0
0
0
Benign
0
0
2
1
3
Total06830199

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

ZNF385D · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC