ZNF292

Chr 6AD

zinc finger protein 292

Also known as: MRD63, MRD64, Nbla00365, ZFP292, ZN-16, Zn-15, bA393I2.3

This gene encodes a growth hormone-dependent, zinc finger transcription factor that functions as a tumor suppressor. Naturally occurring mutations in this gene are associated with gastric cancer, colorectal cancer, and chronic lymphocytic leukemia. [provided by RefSeq, May 2017]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Intellectual developmental disorder, autosomal dominant 64MIM #619188
AD

Clinical highlights

Gene-disease validity (ClinGen)
complex neurodevelopmental disorder · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
13
Pubs (1 yr)
P/LP submissions
P/LP missense
0.14
LOEUF· LoF intol.
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.14LOEUF
pLI 1.000
Z-score 8.30
OE 0.07 (0.040.14)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
1.41Z-score
OE missense 0.89 (0.850.94)
1203 obs / 1348.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.07 (0.040.14)
00.351.4
Missense OE?0.89 (0.850.94)
00.61.4
Synonymous OE?1.12
01.21.6
LoF obs/exp: 7 / 93.8Missense obs/exp: 1203 / 1348.5Syn Z: -2.14

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ZNF292 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.