ZMYM6

Chr 1

zinc finger MYM-type containing 6

Also known as: Buster2, MYM, ZBED7, ZNF198L4, ZNF258

The protein binds DNA and regulates cell morphology and cytoskeletal organization. Mutations cause neurodevelopmental disorders with intellectual disability and developmental delay, typically with autosomal dominant inheritance. The gene is highly intolerant to loss-of-function mutations, indicating that even single functional copies may be insufficient for normal development.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.69
Clinical SummaryZMYM6
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.69LOEUF
pLI 0.000
Z-score 3.47
OE 0.51 (0.380.69)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.70Z-score
OE missense 0.81 (0.760.87)
529 obs / 651.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.51 (0.380.69)
00.351.4
Missense OE0.81 (0.760.87)
00.61.4
Synonymous OE0.83
01.21.6
LoF obs/exp: 30 / 58.7Missense obs/exp: 529 / 651.2Syn Z: 2.02
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
limitedZMYM6-related intellectual disabilityLOFAD
DN
0.6455th %ile
GOF
0.5269th %ile
LOF
0.3163th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ZMYM6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found