ZER1

Chr 9

zyg-11 related cell cycle regulator

Also known as: C9orf60, ZYG, ZYG11BL

The protein serves as a substrate adapter in an E3 ubiquitin ligase complex that targets proteins with specific N-terminal sequences for degradation, playing key roles in apoptotic clearance and protein quality control. Mutations cause autosomal dominant neurodevelopmental disorders with intellectual disability and developmental delay. This gene is highly constrained against loss-of-function variants, indicating that such mutations are likely to be pathogenic.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 0.18
Clinical SummaryZER1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.
📋
ClinVar Variants
34 unique Pathogenic / Likely Pathogenic· 81 VUS of 143 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.18LOEUF
pLI 1.000
Z-score 5.21
OE 0.06 (0.020.18)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
3.75Z-score
OE missense 0.52 (0.470.58)
249 obs / 480.1 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios
LoF OE0.06 (0.020.18)
00.351.4
Missense OE0.52 (0.470.58)
00.61.4
Synonymous OE0.95
01.21.6
LoF obs/exp: 2 / 35.4Missense obs/exp: 249 / 480.1Syn Z: 0.52

ClinVar Variant Classifications

143 submitted variants in ClinVar

Classification Summary

Pathogenic33
Likely Pathogenic1
VUS81
Likely Benign1
33
Pathogenic
1
Likely Pathogenic
81
VUS
1
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
33
0
33
Likely Pathogenic
0
0
1
0
1
VUS
0
73
8
0
81
Likely Benign
0
0
0
1
1
Benign
0
0
0
0
0
Total073421116

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

ZER1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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