XKR5
Chr 8XK related 5
Also known as: HARL2754, UNQ2754, XRG5A, XRG5BM
XKR5 encodes a protein predicted to be active in the plasma membrane. Currently, no definitive human diseases have been established to result from mutations in this gene, and the inheritance pattern remains undetermined. This gene requires further clinical and functional studies to establish its role in pediatric neurogenetic conditions.
Population Genetics & Constraint
Constraint data not available from gnomAD.
This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.
Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.
ClinVar Variant Classifications
228 submitted variants in ClinVar
Classification Summary
Curated Variants Distribution
Classified variants from ClinVar · 5 ACMG categories
| Classification | LoF | Missense + Inframe | Non-coding | Synonymous | Total |
|---|---|---|---|---|---|
Pathogenic | 0 | 0 | 101 | 0 | 101 |
Likely Pathogenic | 0 | 0 | 4 | 0 | 4 |
VUS | 0 | 94 | 13 | 0 | 107 |
Likely Benign | 0 | 2 | 1 | 1 | 4 |
Benign | 0 | 0 | 4 | 0 | 4 |
| Total | 0 | 96 | 123 | 1 | 220 |
LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly
View in ClinVar →Protein Context — Lollipop Plot
XKR5 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools