WDPCP

Chr 2AR

WD repeat containing planar cell polarity effector

Also known as: BBS15, C2orf86, CHDTHP, CPLANE5, FRITZ, FRTZ

This gene encodes a cytoplasmic WD40 repeat protein. A similar gene in frogs encodes a planar cell polarity protein that plays a critical role in collective cell movement and ciliogenesis by mediating septin localization. Mutations in this gene are associated with Bardet-Biedl syndrome 15 and may also play a role in Meckel-Gruber syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Bardet-Biedl syndrome 15MIM #615992
AR
Congenital heart defects, hamartomas of tongue, and polysyndactylyMIM #217085
AR

Clinical highlights

Gene-disease validity (ClinGen)
ciliopathy · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
0.78
LOEUF
LOF
Mechanism· G2P
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GeneReview available — WDPCP
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.78LOEUF
pLI 0.000
Z-score 2.68
OE 0.55 (0.400.78)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.90Z-score
OE missense 0.87 (0.800.95)
345 obs / 395.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.55 (0.400.78)
00.351.4
Missense OE?0.87 (0.800.95)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 23 / 41.6Missense obs/exp: 345 / 395.2Syn Z: -0.49

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

WDPCP · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.