VPS35

Chr 16AD

VPS35 retromer complex component

Also known as: MEM3, PARK17

This gene belongs to a group of vacuolar protein sorting (VPS) genes. The encoded protein is a component of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. The close structural similarity between the yeast and human proteins that make up this complex suggests a similarity in function. Expression studies in yeast and mammalian cells indicate that this protein interacts directly with VPS35, which serves as the core of the retromer complex. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

{Parkinson disease 17}MIM #614203
AD

Clinical highlights

Gene-disease validity (ClinGen)
Parkinson disease · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
82
Pubs (1 yr)
P/LP submissions
P/LP missense
0.31
LOEUF· LoF intol.
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.31LOEUF
pLI 0.969
Z-score 5.20
OE 0.17 (0.100.31)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
3.53Z-score
OE missense 0.52 (0.460.58)
220 obs / 424.9 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.17 (0.100.31)
00.351.4
Missense OE?0.52 (0.460.58)
00.61.4
Synonymous OE?0.97
01.21.6
LoF obs/exp: 8 / 46.0Missense obs/exp: 220 / 424.9Syn Z: 0.26

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

VPS35 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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