VPS11

Chr 11AR

VPS11 core subunit of CORVET and HOPS complexes

Also known as: DYT32, END1, HLD12, HLD12; DYT32, PEP5, RNF108, hVPS11

Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene encodes the human homolog of yeast class C Vps11 protein. The mammalian class C Vps proteins are predominantly associated with late endosomes/lysosomes, and like their yeast counterparts, may mediate vesicle trafficking steps in the endosome/lysosome pathway. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Dystonia 32MIM #619637
AR
Leukodystrophy, hypomyelinating, 12MIM #616683
AR

Clinical highlights

Gene-disease validity (ClinGen)
VPS11-related neurological disorder · ARDefinitivesufficient evidence for diagnostic panels
0
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
0.54
LOEUF
DN
Mechanism· predicted
📖
GeneReview available — VPS11
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.54LOEUF
pLI 0.000
Z-score 4.09
OE 0.36 (0.240.54)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.30Z-score
OE missense 0.72 (0.660.78)
384 obs / 533.6 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.36 (0.240.54)
00.351.4
Missense OE?0.72 (0.660.78)
00.61.4
Synonymous OE?1.07
01.21.6
LoF obs/exp: 17 / 47.4Missense obs/exp: 384 / 533.6Syn Z: -0.78

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

VPS11 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →