VKORC1

Chr 16

vitamin K epoxide reductase complex subunit 1

Also known as: EDTP308, MST134, MST576, VKCFD2, VKOR

This gene encodes the catalytic subunit of the vitamin K epoxide reductase complex, which is responsible for the reduction of inactive vitamin K 2,3-epoxide to active vitamin K in the endoplasmic reticulum membrane. Vitamin K is a required co-factor for carboxylation of glutamic acid residues by vitamin K-dependent gamma-carboxylase in blood-clotting enzymes. Allelic variation in this gene is associated with vitamin k-dependent clotting factors combined deficiency of 2, and increased resistance or sensitivity to warfarin, an inhibitor of vitamin K epoxide reductase. Pseudogenes of this gene are located on chromosomes 1 and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2015]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtCombined deficiency of vitamin K-dependent clotting factors 2
UniProtCoumarin resistance

Clinical highlights

Gene-disease validity (ClinGen)
vitamin K-dependent clotting factors, combined deficiency of, type 2 · ARModerateconsider for supplementary testing
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
73
Pubs (1 yr)
P/LP submissions
P/LP missense
1.02
LOEUF
Multiple*
Mechanism· predicted
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GeneReview available — VKORC1
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.02LOEUF
pLI 0.162
Z-score 1.55
OE 0.32 (0.131.02)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.31Z-score
OE missense 0.91 (0.761.09)
85 obs / 93.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.32 (0.131.02)
00.351.4
Missense OE?0.91 (0.761.09)
00.61.4
Synonymous OE?0.90
01.21.6
LoF obs/exp: 2 / 6.2Missense obs/exp: 85 / 93.3Syn Z: 0.54

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

VKORC1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.