VEGFC

Chr 4AD

vascular endothelial growth factor C

Also known as: Flt4-L, LMPH1D, LMPHM4, VRP

The protein encoded by this gene is a member of the platelet-derived growth factor/vascular endothelial growth factor (PDGF/VEGF) family. The encoded protein promotes angiogenesis and endothelial cell growth, and can also affect the permeability of blood vessels. The proprotein is further cleaved into a fully processed form that can bind and activate VEGFR-2 and VEGFR-3 receptors. [provided by RefSeq, Apr 2014]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Lymphatic malformation 4MIM #615907
AD

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
118
Pubs (1 yr)
P/LP submissions
P/LP missense
0.48
LOEUF
LOF
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.48LOEUF
pLI 0.496
Z-score 3.21
OE 0.21 (0.100.48)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.85Z-score
OE missense 0.84 (0.750.95)
194 obs / 230.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.21 (0.100.48)
00.351.4
Missense OE?0.84 (0.750.95)
00.61.4
Synonymous OE?1.03
01.21.6
LoF obs/exp: 4 / 19.1Missense obs/exp: 194 / 230.2Syn Z: -0.23

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

VEGFC · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.