USP19

Chr 3

ubiquitin specific peptidase 19

Also known as: ZMYND9

Protein ubiquitination controls many intracellular processes, including cell cycle progression, transcriptional activation, and signal transduction. This dynamic process, involving ubiquitin conjugating enzymes and deubiquitinating enzymes, adds and removes ubiquitin. Deubiquitinating enzymes are cysteine proteases that specifically cleave ubiquitin from ubiquitin-conjugated protein substrates. This protein is a ubiquitin protein ligase and plays a role in muscle wasting. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2017]

ResearchGenerating clinical summary…
LOEUF 0.20
Clinical SummaryUSP19
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.
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Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.20LOEUF
pLI 1.000
Z-score 6.66
OE 0.11 (0.060.20)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.99Z-score
OE missense 0.81 (0.760.86)
691 obs / 854.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.11 (0.060.20)
00.351.4
Missense OE?0.81 (0.760.86)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 7 / 64.9Missense obs/exp: 691 / 854.7Syn Z: 1.63

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

USP19 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.