UGT2B28

Chr 4

UDP glucuronosyltransferase family 2 member B28

The protein is a UDP-glucuronosyltransferase that catalyzes glucuronidation reactions, conjugating lipophilic substrates including steroid hormones, bile acids, and xenobiotics with glucuronic acid to facilitate their excretion and detoxification. This gene is not well-constrained against loss-of-function variants and no established Mendelian diseases have been associated with UGT2B28 mutations in the pediatric population. Clinical significance of variants in this gene remains unclear in the context of pediatric neurogenetic disorders.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 1.69
Clinical SummaryUGT2B28
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.69LOEUF
pLI 0.000
Z-score -0.88
OE 1.21 (0.881.69)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-2.18Z-score
OE missense 1.37 (1.261.50)
373 obs / 271.9 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.21 (0.881.69)
00.351.4
Missense OE1.37 (1.261.50)
00.61.4
Synonymous OE1.34
01.21.6
LoF obs/exp: 24 / 19.8Missense obs/exp: 373 / 271.9Syn Z: -2.55
DN
0.79top 25%
GOF
0.6931th %ile
LOF
0.2190th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

UGT2B28 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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