UGT1A4

Chr 2

UDP glucuronosyltransferase family 1 member A4

Also known as: HUG-BR2, UDPGT 1-4, UGT-1D, UGT1-04, UGT1.4, UGT1A4S, UGT1D

UGT1A4 encodes a UDP-glucuronosyltransferase enzyme that conjugates lipophilic substrates including drugs, steroids, and vitamin D metabolites with glucuronic acid to facilitate their excretion from the body. Mutations cause hyperbilirubinemia due to reduced glucuronidation activity, inherited in an autosomal recessive pattern. The gene shows low constraint against loss-of-function variants, consistent with the recessive inheritance pattern of associated bilirubin metabolism disorders.

Summary from RefSeq, UniProt
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0
Active trials
20
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.13
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryUGT1A4
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.13LOEUF
pLI 0.000
Z-score 1.15
OE 0.70 (0.451.13)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-1.65Z-score
OE missense 1.27 (1.171.38)
378 obs / 298.0 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.70 (0.451.13)
00.351.4
Missense OE1.27 (1.171.38)
00.61.4
Synonymous OE1.40
01.21.6
LoF obs/exp: 12 / 17.1Missense obs/exp: 378 / 298.0Syn Z: -3.49
DN
0.78top 25%
GOF
0.72top 25%
LOF
0.1894th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

UGT1A4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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