UBE2E3

Chr 2

ubiquitin conjugating enzyme E2 E3

Also known as: UBCH9, UbcM2

The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating enzyme family. The encoded protein shares 100% sequence identity with the mouse and rat counterparts, which indicates that this enzyme is highly conserved in eukaryotes. Multiple alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jun 2013]

OMIMResearchGenerating clinical summary…
LOEUF 0.66
Clinical SummaryUBE2E3
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.21) despite low pLI — interpret in context.
📋
ClinVar Variants
5 VUS of 12 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.66LOEUF
pLI 0.426
Z-score 2.27
OE 0.21 (0.080.66)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
2.75Z-score
OE missense 0.26 (0.200.36)
29 obs / 110.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.21 (0.080.66)
00.351.4
Missense OE?0.26 (0.200.36)
00.61.4
Synonymous OE?1.03
01.21.6
LoF obs/exp: 2 / 9.6Missense obs/exp: 29 / 110.3Syn Z: -0.16

ClinVar Variant Classifications

12 submitted variants in ClinVar

Classification Summary

VUS5
5
VUS

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
0
0
0
Likely Pathogenic
0
0
0
0
0
VUS
0
4
1
0
5
Likely Benign
0
0
0
0
0
Benign
0
0
0
0
0
Total04105

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

28 pathogenic / likely-pathogenic (of 30) ClinVar copy-number / structural variants overlap UBE2E3 — these span large chromosomal regions, not the gene specifically, and are excluded from the counts above. Explore in CNV tools →

Protein Context — Lollipop Plot

UBE2E3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →