TWIST2

Chr 2

twist family bHLH transcription factor 2

Also known as: AMS, BBRSAY, DERMO1, FFDD3, SETLSS, bHLHa39

The protein encoded by this gene is a basic helix-loop-helix type transcription factor and shares similarity with Twist. This protein may inhibit osteoblast maturation and maintain cells in a preosteoblast phenotype during osteoblast development. This gene may be upregulated in certain cancers. Mutations in this gene cause focal facial dermal dysplasia 3, Setleis type. Two transcript variants encoding the same protein have been found. [provided by RefSeq, Apr 2014]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtFocal facial dermal dysplasia 3, Setleis type
UniProtAblepharon-macrostomia syndrome
UniProtBarber-Say syndrome

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
33
Pubs (1 yr)
P/LP submissions
P/LP missense
1.15
LOEUF
Multiple*
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
1.15LOEUF
pLI 0.560
Z-score 1.46
OE 0.00 (0.001.15)
Moderately constrained

Highly tolerant — LoF variants common in population

Missense Constraint?
2.13Z-score
OE missense 0.37 (0.280.49)
33 obs / 89.9 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.00 (0.001.15)
00.351.4
Missense OE?0.37 (0.280.49)
00.61.4
Synonymous OE?0.62
01.21.6
LoF obs/exp: 0 / 2.5Missense obs/exp: 33 / 89.9Syn Z: 1.88

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TWIST2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →