TUFM

Chr 16AR

Tu translation elongation factor, mitochondrial

Also known as: COXPD4, EF-TuMT, EFTU, P43

This gene encodes a mitochondrial elongation factor that facilitates protein synthesis within mitochondria by promoting translocation of aminoacyl-tRNA during translation. Mutations cause combined oxidative phosphorylation deficiency 4, an autosomal recessive disorder characterized by lactic acidosis and fatal encephalopathy due to impaired mitochondrial respiratory chain function. The pathogenic mechanism involves dominant-negative effects where mutant proteins interfere with normal mitochondrial protein synthesis.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
MultiplemechanismARLOEUF 0.741 OMIM phenotype
Clinical SummaryTUFM
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Gene-Disease Validity (ClinGen)
mitochondrial disease · ARModerate

Moderate evidence — consider for supplementary testing

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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ClinVar Variants
121 unique Pathogenic / Likely Pathogenic· 148 VUS of 398 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.74LOEUF
pLI 0.004
Z-score 2.37
OE 0.39 (0.220.74)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.40Z-score
OE missense 0.76 (0.680.85)
205 obs / 269.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.39 (0.220.74)
00.351.4
Missense OE0.76 (0.680.85)
00.61.4
Synonymous OE0.99
01.21.6
LoF obs/exp: 7 / 17.8Missense obs/exp: 205 / 269.5Syn Z: 0.09
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongTUFM-related combined oxidative phosphorylation deficiencyOTHERAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.7036th %ile
GOF
0.6638th %ile
LOF
0.3453th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

398 submitted variants in ClinVar

Classification Summary

Pathogenic108
Likely Pathogenic13
VUS148
Likely Benign87
Benign10
Conflicting21
108
Pathogenic
13
Likely Pathogenic
148
VUS
87
Likely Benign
10
Benign
21
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
2
1
105
0
108
Likely Pathogenic
0
3
10
0
13
VUS
2
86
57
3
148
Likely Benign
0
1
44
42
87
Benign
0
0
9
1
10
Conflicting
21
Total49122546387

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

TUFM · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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