TUBB2A

Chr 6AD

tubulin beta 2A class IIa

Also known as: CDCBM5, TUBB, TUBB2

This gene encodes a beta-tubulin protein that forms heterodimers with alpha-tubulin to create microtubules, which are essential cytoskeletal structures that facilitate mitosis and intracellular transport. Mutations cause complex cortical dysplasia with other brain malformations-5, inherited in an autosomal dominant pattern. The gene is highly constrained against loss-of-function variants (pLI 0.93, LOEUF 0.36), reflecting its critical role in normal brain development.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismADLOEUF 0.361 OMIM phenotype
Clinical SummaryTUBB2A
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Gene-Disease Validity (ClinGen)
tubulinopathy · ADDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.93). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.36LOEUF
pLI 0.935
Z-score 3.10
OE 0.08 (0.030.36)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
5.26Z-score
OE missense 0.11 (0.080.15)
31 obs / 277.9 exp
Constrained

Extremely missense-constrained (top ~0.01%)

Observed / Expected Ratios
LoF OE0.08 (0.030.36)
00.351.4
Missense OE0.11 (0.080.15)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 1 / 13.1Missense obs/exp: 31 / 277.9Syn Z: -0.06
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveTUBB2A-related cortical dysplasia, complex, with other brain malformationsOTHERAD
DN
0.5869th %ile
GOF
0.4578th %ile
LOF
0.60top 25%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOF1 literature citation · LOEUF 0.36

Literature Evidence

LOFThus, confirming that these specific developmental brain malformations are due to TUBB2A and TUBB2B haploinsufficiency.PMID:31634935

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TUBB2A · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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