TTLL11

Chr 9

tubulin tyrosine ligase like 11

Also known as: C9orf148, C9orf20, TTLL11-IT1, bA244O19.1

TTLL11 encodes a polyglutamylase that modifies tubulin by adding polyglutamate side chains to the C-terminal tail, which is essential for proper microtubule function and cilia formation. Mutations cause autosomal recessive retinal dystrophy with early childhood onset, characterized by progressive vision loss due to photoreceptor degeneration. The gene shows minimal constraint against loss-of-function variants, consistent with its recessive inheritance pattern.

OMIMResearchSummary from RefSeq, UniProt
GOFmechanismLOEUF 1.07
Clinical SummaryTTLL11
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.07LOEUF
pLI 0.000
Z-score 1.30
OE 0.71 (0.481.07)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
2.03Z-score
OE missense 0.72 (0.660.80)
308 obs / 425.8 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.71 (0.481.07)
00.351.4
Missense OE0.72 (0.660.80)
00.61.4
Synonymous OE1.00
01.21.6
LoF obs/exp: 16 / 22.7Missense obs/exp: 308 / 425.8Syn Z: 0.02
DN
0.6163th %ile
GOF
0.6735th %ile
LOF
0.4038th %ile

The highest-scoring mechanism for this gene is gain-of-function.

GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TTLL11 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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