TSPAN12

Chr 7

tetraspanin 12

Also known as: EVR5, NET-2, NET2, TM4SF12

The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. [provided by RefSeq, Jul 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtVitreoretinopathy, exudative 5

Clinical highlights

Gene-disease validity (ClinGen)
TSPAN12-related exudative vitreoretinopathy · SDDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
16
Pubs (1 yr)
P/LP submissions
P/LP missense
0.46
LOEUF
LOF*
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.46LOEUF
pLI 0.695
Z-score 3.14
OE 0.18 (0.080.46)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.77Z-score
OE missense 0.83 (0.720.96)
131 obs / 158.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.18 (0.080.46)
00.351.4
Missense OE?0.83 (0.720.96)
00.61.4
Synonymous OE?1.01
01.21.6
LoF obs/exp: 3 / 17.0Missense obs/exp: 131 / 158.2Syn Z: -0.04

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TSPAN12 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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