TSEN34

Chr 19

tRNA splicing endonuclease subunit 34

Also known as: LENG5, PCH2C, SEN34, SEN34L

This gene encodes a catalytic subunit of the tRNA splicing endonuclease, which catalyzes the removal of introns from precursor tRNAs. The endonuclease complex is also associated with a pre-mRNA 3-prime end processing factor. A mutation in this gene results in the neurological disorder pontocerebellar hypoplasia type 2. Multiple alternatively spliced variants, encoding the same protein, have been identified.[provided by RefSeq, Oct 2009]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtPontocerebellar hypoplasia 2C

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
0
Pubs (1 yr)
P/LP submissions
P/LP missense
0.58
LOEUF
Mechanism
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GeneReview available — TSEN34
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.58LOEUF
pLI 0.361
Z-score 2.61
OE 0.23 (0.100.58)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
-0.96Z-score
OE missense 1.20 (1.071.34)
217 obs / 180.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.23 (0.100.58)
00.351.4
Missense OE?1.20 (1.071.34)
00.61.4
Synonymous OE?1.27
01.21.6
LoF obs/exp: 3 / 13.3Missense obs/exp: 217 / 180.5Syn Z: -1.93

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TSEN34 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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