TSEN15

Chr 1

tRNA splicing endonuclease subunit 15

Also known as: C1orf19, PCH2F, sen15

This gene encodes a subunit of the tRNA splicing endonuclease, which catalyzes the removal of introns from tRNA precursors. Alternative splicing results in multiple transcript variants. There is a pseudogene of this gene on chromosome 17. [provided by RefSeq, Jul 2014]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtPontocerebellar hypoplasia 2F

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
2
Pubs (1 yr)
P/LP submissions
P/LP missense
0.80
LOEUF
Mechanism
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.80LOEUF
pLI 0.279
Z-score 1.95
OE 0.25 (0.100.80)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.17Z-score
OE missense 0.65 (0.520.81)
56 obs / 86.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.25 (0.100.80)
00.351.4
Missense OE?0.65 (0.520.81)
00.61.4
Synonymous OE?0.79
01.21.6
LoF obs/exp: 2 / 7.9Missense obs/exp: 56 / 86.7Syn Z: 0.92

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TSEN15 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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