TRIP12

Chr 2

thyroid hormone receptor interactor 12

Also known as: MRD49, TRIP-12, TRIPC, ULF

The protein encoded by this gene is an E3 ubiquitin-protein ligase involved in the degradation of the p19ARF/ARF isoform of CDKN2A, a tumor suppressor. The encoded protein also plays a role in the DNA damage response by regulating the stability of USP7, which regulates tumor suppressor p53. [provided by RefSeq, Jan 2017]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtClark-Baraitser syndrome

Clinical highlights

Gene-disease validity (ClinGen)
complex neurodevelopmental disorder · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
36
Pubs (1 yr)
P/LP submissions
P/LP missense
0.06
LOEUF· LoF intol.
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.06LOEUF
pLI 1.000
Z-score 9.34
OE 0.02 (0.010.06)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
4.64Z-score
OE missense 0.60 (0.560.64)
639 obs / 1065.2 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.02 (0.010.06)
00.351.4
Missense OE?0.60 (0.560.64)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 2 / 105.5Missense obs/exp: 639 / 1065.2Syn Z: -0.76

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TRIP12 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.