TRIM14

Chr 9

tripartite motif containing 14

TRIM14 encodes a protein that promotes antiviral and antibacterial innate immune responses by facilitating type I interferon signaling pathways and promoting degradation of viral proteins. Mutations cause autosomal recessive severe combined immunodeficiency with microcephaly, growth retardation, and sensitivity to viral infections. The gene shows low constraint against loss-of-function variants, consistent with its recessive inheritance pattern.

OMIMResearchSummary from UniProt
MultiplemechanismLOEUF 0.87
Clinical SummaryTRIM14
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
51 unique Pathogenic / Likely Pathogenic· 158 VUS of 325 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.87LOEUF
pLI 0.005
Z-score 1.92
OE 0.44 (0.240.87)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.82Z-score
OE missense 0.81 (0.700.94)
121 obs / 149.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.44 (0.240.87)
00.351.4
Missense OE0.81 (0.700.94)
00.61.4
Synonymous OE0.97
01.21.6
LoF obs/exp: 6 / 13.7Missense obs/exp: 121 / 149.1Syn Z: 0.21
DN
0.75top 25%
GOF
0.77top 25%
LOF
0.2387th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

325 submitted variants in ClinVar

Classification Summary

Pathogenic37
Likely Pathogenic14
VUS158
Likely Benign73
Benign19
Conflicting3
37
Pathogenic
14
Likely Pathogenic
158
VUS
73
Likely Benign
19
Benign
3
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
5
1
31
0
37
Likely Pathogenic
4
5
5
0
14
VUS
1
149
8
0
158
Likely Benign
0
6
23
44
73
Benign
0
2
11
6
19
Conflicting
3
Total101637850304

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

TRIM14 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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