TRAPPC9

Chr 8

trafficking protein particle complex subunit 9

Also known as: IBP, IKBKBBP, MRT13, NIBP, T1, TRS120

This gene encodes a protein that likely plays a role in NF-kappa-B signaling. Mutations in this gene have been associated with autosomal-recessive cognitive disability. Alternatively spliced transcript variants have been described.[provided by RefSeq, Feb 2010]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtIntellectual developmental disorder, autosomal recessive 13

Clinical highlights

Gene-disease validity (ClinGen)
intellectual disability-obesity-brain malformations-facial dysmorphism syndrome · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
0.73
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.73LOEUF
pLI 0.000
Z-score 3.23
OE 0.55 (0.410.73)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.48Z-score
OE missense 0.85 (0.790.91)
626 obs / 739.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.55 (0.410.73)
00.351.4
Missense OE?0.85 (0.790.91)
00.61.4
Synonymous OE?1.12
01.21.6
LoF obs/exp: 32 / 58.7Missense obs/exp: 626 / 739.2Syn Z: -1.64

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TRAPPC9 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.