TPT1

Chr 13

tumor protein, translationally-controlled 1

Also known as: HRF, TCTP, p02, p23

The protein encoded by this gene regulates cellular growth and proliferation, binds calcium, stabilizes microtubules, and acts as a negative regulator of apoptosis. Mutations cause autosomal dominant neurodegeneration with brain atrophy, characterized by progressive developmental regression, intellectual disability, and seizures with onset in infancy or early childhood. The gene is highly constrained against loss-of-function mutations, suggesting that haploinsufficiency may be poorly tolerated.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 0.48
Clinical SummaryTPT1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.81) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.48LOEUF
pLI 0.805
Z-score 2.60
OE 0.10 (0.040.48)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.53Z-score
OE missense 0.56 (0.450.70)
53 obs / 94.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.10 (0.040.48)
00.351.4
Missense OE0.56 (0.450.70)
00.61.4
Synonymous OE1.30
01.21.6
LoF obs/exp: 1 / 9.8Missense obs/exp: 53 / 94.8Syn Z: -1.33

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TPT1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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