TNFSF11
Chr 13ARTNF superfamily member 11
Also known as: CD254, ODF, OPGL, OPTB2, RANKL, TNLG6B, TRANCE, hRANKL2
The protein functions as a cytokine that binds to osteoprotegerin and RANK receptor, serving as a key factor for osteoclast differentiation and activation, and also regulates T-cell dependent immune responses and dendritic cell survival. Mutations cause autosomal recessive osteopetrosis type 2, characterized by defective bone resorption due to absent or dysfunctional osteoclasts, leading to dense but brittle bones and potential complications including bone marrow failure and cranial nerve compression. This gene shows low constraint against loss-of-function variants (pLI 0.005), consistent with the recessive inheritance pattern where heterozygous carriers are typically unaffected.
Definitive — sufficient evidence for diagnostic panels
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Typical tolerance to LoF variation
Mild missense constraint
The highest-scoring mechanism for this gene is dominant-negative.
Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.
ClinVar Variant Classifications
321 submitted variants in ClinVar
Classification Summary
Curated Variants Distribution
Classified variants from ClinVar · 5 ACMG categories
| Classification | LoF | Missense + Inframe | Non-coding | Synonymous | Total |
|---|---|---|---|---|---|
Pathogenic | 2 | 1 | 50 | 0 | 53 |
Likely Pathogenic | 1 | 0 | 0 | 0 | 1 |
VUS | 1 | 91 | 34 | 3 | 129 |
Likely Benign | 0 | 2 | 24 | 83 | 109 |
Benign | 0 | 2 | 12 | 4 | 18 |
Conflicting | — | 9 | |||
| Total | 4 | 96 | 120 | 90 | 319 |
LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly
View in ClinVar →Protein Context — Lollipop Plot
TNFSF11 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools