TNFRSF10C

Chr 8

TNF receptor superfamily member 10c

Also known as: CD263, DCR1, DCR1-TNFR, LIT, TRAIL-R3, TRAILR3, TRID

The protein is a TNF receptor superfamily member that binds TRAIL ligand but lacks a cytoplasmic death domain, functioning as a decoy receptor that protects cells from TRAIL-induced apoptosis. This gene is loss-of-function tolerant and no Mendelian diseases have been established from mutations in TNFRSF10C. The protein is highly expressed in normal tissues but absent in most cancer cell lines, suggesting a role in protecting normal cells from cytotoxic signals.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
13
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.80
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryTNFRSF10C
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.80LOEUF
pLI 0.000
Z-score -0.24
OE 1.09 (0.641.80)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.82Z-score
OE missense 0.81 (0.700.94)
121 obs / 149.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE1.09 (0.641.80)
00.351.4
Missense OE0.81 (0.700.94)
00.61.4
Synonymous OE0.67
01.21.6
LoF obs/exp: 8 / 7.3Missense obs/exp: 121 / 149.2Syn Z: 1.88
DN
0.81top 10%
GOF
0.91top 5%
LOF
0.1994th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TNFRSF10C · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC