TMTC3

Chr 12

transmembrane O-mannosyltransferase targeting cadherins 3

Also known as: LIS8, SMILE

This gene encodes a protein that belongs to the transmembrane and tetratricopeptide repeat-containing protein family. [provided by RefSeq, May 2010]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtLissencephaly 8

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
2
Pubs (1 yr)
P/LP submissions
P/LP missense
0.56
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.56LOEUF
pLI 0.000
Z-score 3.76
OE 0.37 (0.240.56)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.62Z-score
OE missense 0.79 (0.720.86)
364 obs / 461.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.37 (0.240.56)
00.351.4
Missense OE?0.79 (0.720.86)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 15 / 41.0Missense obs/exp: 364 / 461.7Syn Z: 1.11

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TMTC3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →