TMEM92

Chr 17

transmembrane protein 92

The protein is located in the nucleoplasm, but its specific cellular function remains unknown. No human diseases have been definitively associated with TMEM92 mutations to date. The gene shows tolerance to loss-of-function variants based on population genetics data, with a predicted gain-of-function mechanism for potential pathogenic variants.

Summary from RefSeq, Mechanism
0
Active trials
0
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.41
LOEUF
GOF
Mechanism· predicted
Clinical SummaryTMEM92
Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.41LOEUF
pLI 0.006
Z-score 0.88
OE 0.63 (0.311.41)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.29Z-score
OE missense 0.91 (0.771.10)
84 obs / 91.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.63 (0.311.41)
00.351.4
Missense OE0.91 (0.771.10)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 4 / 6.4Missense obs/exp: 84 / 91.8Syn Z: -0.03
DN
0.7327th %ile
GOF
0.7126th %ile
LOF
0.2191th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TMEM92 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗