TMEM135

Chr 11

transmembrane protein 135

Also known as: PMP52

TMEM135 encodes a protein that regulates mitochondrial dynamics by controlling the balance between mitochondrial fusion and fission, and may also function in peroxisome organization and fatty acid transport. Mutations cause autosomal recessive spastic paraplegia with onset typically in childhood or adolescence, characterized by progressive lower limb spasticity and weakness. The gene shows significant constraint against loss-of-function variants (LOEUF 0.39), indicating that complete loss of protein function is likely poorly tolerated.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 0.39
Clinical SummaryTMEM135
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.78) — some intolerance to loss-of-function variants.
📋
ClinVar Variants
20 unique Pathogenic / Likely Pathogenic· 49 VUS of 110 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.39LOEUF
pLI 0.779
Z-score 3.92
OE 0.19 (0.100.39)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.56Z-score
OE missense 0.72 (0.640.81)
177 obs / 245.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.19 (0.100.39)
00.351.4
Missense OE0.72 (0.640.81)
00.61.4
Synonymous OE1.10
01.21.6
LoF obs/exp: 5 / 27.0Missense obs/exp: 177 / 245.9Syn Z: -0.71

ClinVar Variant Classifications

110 submitted variants in ClinVar

Classification Summary

Pathogenic19
Likely Pathogenic1
VUS49
Likely Benign6
Benign6
19
Pathogenic
1
Likely Pathogenic
49
VUS
6
Likely Benign
6
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
19
0
19
Likely Pathogenic
0
0
1
0
1
VUS
0
42
7
0
49
Likely Benign
0
4
1
1
6
Benign
0
4
1
1
6
Total05029281

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

TMEM135 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗