TLE4

Chr 9

TLE family member 4, transcriptional corepressor

Also known as: BCE-1, BCE1, E(spI), E(spl), ESG, ESG4, GRG4, Grg-4

TLE4 encodes a transcriptional corepressor that inhibits gene expression by binding to transcription factors and regulating Wnt signaling pathways. Mutations cause neurodevelopmental disorders with intellectual disability, seizures, and brain malformations, inherited in an autosomal dominant pattern. This gene is extremely intolerant to loss-of-function variants, indicating that even single gene copies are critical for normal development.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.15
Clinical SummaryTLE4
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.15LOEUF
pLI 1.000
Z-score 5.73
OE 0.05 (0.020.15)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint
3.60Z-score
OE missense 0.53 (0.480.59)
246 obs / 463.9 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios
LoF OE0.05 (0.020.15)
00.351.4
Missense OE0.53 (0.480.59)
00.61.4
Synonymous OE1.02
01.21.6
LoF obs/exp: 2 / 42.1Missense obs/exp: 246 / 463.9Syn Z: -0.16
DN
0.3694th %ile
GOF
0.2796th %ile
LOF
0.86top 5%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.15

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TLE4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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