TIMM21

Chr 18

translocase of inner mitochondrial membrane 21

Also known as: C18orf55, HSPC154, TIM21

The TIMM21 protein facilitates translocation of nuclear-encoded proteins across the mitochondrial inner membrane and is required for assembly of respiratory chain complexes I and IV as part of the MITRAC complex. Mutations cause autosomal recessive mitochondrial complex I deficiency with associated neurodegeneration, developmental delay, and multi-organ involvement. The gene shows relatively low constraint against loss-of-function variants.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
1
Pubs (1 yr)
152
P/LP submissions
0%
P/LP missense
1.15
LOEUF
DN
Mechanism· predicted
Clinical SummaryTIMM21
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
150 unique Pathogenic / Likely Pathogenic· 58 VUS of 217 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.15LOEUF
pLI 0.000
Z-score 1.20
OE 0.64 (0.371.15)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.01Z-score
OE missense 1.00 (0.871.15)
136 obs / 136.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.64 (0.371.15)
00.351.4
Missense OE1.00 (0.871.15)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 8 / 12.6Missense obs/exp: 136 / 136.3Syn Z: -0.06
DN
0.7034th %ile
GOF
0.3689th %ile
LOF
0.3066th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

217 submitted variants in ClinVar

Classification Summary

Pathogenic144
Likely Pathogenic6
VUS58
Likely Benign4
144
Pathogenic
6
Likely Pathogenic
58
VUS
4
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
144
0
144
Likely Pathogenic
0
0
6
0
6
VUS
0
45
13
0
58
Likely Benign
0
4
0
0
4
Benign
0
0
0
0
0
Total0491630212

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

TIMM21 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found