TIAM2

Chr 6

TIAM Rac1 associated GEF 2

Also known as: STEF, TIAM-2

TIAM2 encodes a guanine nucleotide exchange factor that activates RAC1 GTPase, mediating extracellular laminin signals essential for neurite growth, neuronal migration in the cerebral cortex, and growth cone advancement in developing neurons. Mutations cause autosomal recessive intellectual disability with seizures and cortical malformations, reflecting the protein's critical role in neuronal development and migration. The gene is highly constrained against loss-of-function variants (LOEUF 0.433), indicating that complete loss of protein function is likely pathogenic.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 0.43
Clinical SummaryTIAM2
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.31) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.43LOEUF
pLI 0.000
Z-score 5.59
OE 0.31 (0.220.43)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.24Z-score
OE missense 0.89 (0.840.94)
851 obs / 959.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.31 (0.220.43)
00.351.4
Missense OE0.89 (0.840.94)
00.61.4
Synonymous OE1.07
01.21.6
LoF obs/exp: 23 / 75.3Missense obs/exp: 851 / 959.5Syn Z: -1.12
DN
0.6647th %ile
GOF
0.6638th %ile
LOF
0.4332th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TIAM2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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