THSD1

Chr 13ADAR

thrombospondin type 1 domain containing 1

Also known as: ANIB12, LMPHM13, TMTSP, UNQ3010

The protein is a positive regulator of focal adhesion assembly that modulates endothelial cell attachment to the extracellular matrix through its thrombospondin domain. Mutations cause intracranial berry aneurysms and lymphatic malformations, reflecting its role in vascular development and integrity. The gene shows both autosomal dominant and autosomal recessive inheritance patterns depending on the specific condition.

OMIMResearchSummary from RefSeq, OMIM, UniProt
MultiplemechanismAD/ARLOEUF 0.882 OMIM phenotypes
Clinical SummaryTHSD1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.88LOEUF
pLI 0.000
Z-score 2.04
OE 0.58 (0.390.88)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.50Z-score
OE missense 0.94 (0.871.01)
452 obs / 482.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.58 (0.390.88)
00.351.4
Missense OE0.94 (0.871.01)
00.61.4
Synonymous OE1.00
01.21.6
LoF obs/exp: 16 / 27.5Missense obs/exp: 452 / 482.7Syn Z: 0.03
DN
0.7132th %ile
GOF
0.6834th %ile
LOF
0.3841th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

THSD1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC