THAP1

Chr 8AD

THAP domain containing 1

Also known as: DYT6

The THAP1 protein contains a conserved DNA-binding domain and functions as a proapoptotic factor that colocalizes with apoptosis response proteins in nuclear bodies. Mutations cause dystonia 6, a form of torsion dystonia, inherited in an autosomal dominant pattern. The gene is highly intolerant to loss-of-function mutations, suggesting haploinsufficiency as the likely disease mechanism.

GeneReviewsOMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismADLOEUF 0.491 OMIM phenotype
Clinical SummaryTHAP1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.80) — some intolerance to loss-of-function variants.
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GeneReview available — THAP1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.49LOEUF
pLI 0.801
Z-score 2.59
OE 0.10 (0.040.49)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.37Z-score
OE missense 0.64 (0.530.78)
74 obs / 115.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.10 (0.040.49)
00.351.4
Missense OE0.64 (0.530.78)
00.61.4
Synonymous OE0.90
01.21.6
LoF obs/exp: 1 / 9.7Missense obs/exp: 74 / 115.5Syn Z: 0.52
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongTHAP1-related dystonia, torsionLOFAD
DN
0.4983th %ile
GOF
0.3491th %ile
LOF
0.56top 25%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOF1 literature citation · LOEUF 0.49

Literature Evidence

LOFDystonia 6 (DYT6) is an autosomal dominant dystonia caused by loss-of-function mutations in the zinc finger transcription factor THAP1.PMID:30590536

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

THAP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Dystonia.
Balint B et al.·Nat Rev Dis Primers
2018Review
Genetics and Pathogenesis of Dystonia.
Thomsen M et al.·Annu Rev Pathol
2024Review
Genetic Update and Treatment for Dystonia.
Koptielow J et al.·Int J Mol Sci
2024Review
Isolated dystonia: clinical and genetic updates.
Domingo A et al.·J Neural Transm (Vienna)
2021Review
Top 5 results · since 2015Search PubMed ↗